source: distools/clevald.m @ 118

%CLEVALD Classifier evaluation (learning curve) for dissimilarity data
%
%   E = CLEVALD(D,CLASSF,TRAINSIZES,REPSIZE,NREPS,T,TESTFUN)
%
% INPUT
%   D          Square dissimilarity dataset
%   CLASSF     Classifiers to be evaluated (cell array)
%   TRAINSIZE  Vector of training set sizes, used to generate subsets of D
%              (default [2,3,5,7,10,15,20,30,50,70,100]). TRAINSIZE is per
%              class unless D has no priors set or has soft labels.
%   REPSIZE    Representation set size per class (>=1), or fraction (<1)
%              (default total, training set)
%   NREPS      Number of repetitions (default 1)
%   T          Test dataset (default [], use remaining samples in A)
%   TESTFUN    Mapping,evaluation function (default classification error)
%
% OUTPUT
%   E          Error structure (see PLOTE) containing training and test
%              errors
%
% DESCRIPTION
% Generates at random, for all class sizes defined in TRAINSIZES, training
% sets out of the dissimilarity dataset D. The representation set is either
% equal to the training set (REPSIZE = []), or a fraction of it (REPSIZE <1)
% or a random subset of it of a given size (REPSIZE>1). This set is used
% for training the untrained classifiers CLASSF. The resulting trained
% classifiers are tested on the training objects and on the left-over test 
% objects, or, if supplied, the testset T. This procedure is then repeated 
% NREPS times. The default test routine is classification error estimation 
% by TESTC([],'crisp'). 
%
% The returned structure E contains several fields for annotating the plot
% produced by PLOTE. They may be changed by the users. Removal of the field
% 'apperror' (RMFIELD(E,'apperror')) suppresses the draw of the error
% curves for the training set.
%
% Training set generation is done "with replacement" and such that for each
% run the larger training sets include the smaller ones and that for all
% classifiers the same training sets are used.
%
% This function uses the RAND random generator and thereby reproduces 
% if its seed is reset (see RAND).
% If CLASSF uses RANDN, its seed should be reset as well.
%
% SEE ALSO
% MAPPINGS, DATASETS, CLEVAL, TESTC, PLOTE

% R.P.W. Duin, r.p.w.duin@prtools.org
% Faculty EWI, Delft University of Technology
% P.O. Box 5031, 2600 GA Delft, The Netherlands

function e = clevald(a,classf,learnsizes,repsize,nreps,t,testfun)

        prtrace(mfilename);

  if (nargin < 7) | isempty(testfun)
    testfun = testc([],'crisp');
  end;
  if (nargin < 6) 
    t = [];
  end;
  if (nargin < 5) | isempty(nreps);
    nreps = 1;
  end;
  if (nargin < 4) 
    repsize = [];
  end
  if (nargin < 3) | isempty(learnsizes);
    learnsizes = [2,3,5,7,10,15,20,30,50,70,100];
  end;
  if ~iscell(classf), classf = {classf}; end

  % Assert that all is right.
  isdataset(a); issquare(a); ismapping(classf{1}); 
  if (~isempty(t)), isdataset(t); end

  % Remove requested class sizes that are larger than the size of the
  % smallest class.

        [m,k,c] = getsize(a);
        if ~isempty(a,'prior') & islabtype(a,'crisp')
                classs = true;
                mc = classsizes(a);
                toolarge = find(learnsizes >= min(mc));
                if (~isempty(toolarge))
                        prwarning(2,['training set class sizes ' num2str(learnsizes(toolarge)) ...
                                                                         ' larger than the minimal class size; removed them']);
                        learnsizes(toolarge) = [];
                end
        else
                if islabtype(a,'crisp') & isempty(a,'prior')
                        prwarning(1,['No priors found in dataset, class frequencies are used.' ...
                        newline '            Training set sizes hold for entire dataset']);
                end
                classs = false;
                toolarge = find(learnsizes >= m);
                if (~isempty(toolarge))
                        prwarning(2,['training set sizes ' num2str(learnsizes(toolarge)) ...
                                                                         ' larger than number of objects; removed them']);
                        learnsizes(toolarge) = [];
                end
        end
  learnsizes = learnsizes(:)';

  % Fill the error structure.

  nw = length(classf(:));
  datname = getname(a);

  e.n       = nreps;
  e.error   = zeros(nw,length(learnsizes));
  e.std     = zeros(nw,length(learnsizes));
  e.apperror   = zeros(nw,length(learnsizes));
  e.appstd     = zeros(nw,length(learnsizes));
  e.xvalues = learnsizes(:)';
        if classs
                e.xlabel   = 'Training set size per class';
        else
                e.xlabel   = 'Training set size';
        end
  e.names   = [];
  if (nreps > 1)
    e.ylabel= ['Averaged error (' num2str(nreps) ' experiments)'];
  elseif (nreps == 1)
    e.ylabel = 'Error';
  else
    error('Number of repetitions NREPS should be >= 1.');
  end;
  if (~isempty(datname))
    if isempty(repsize)
      e.title = [datname ', Rep. Set = Train Set'];
    elseif repsize < 1
      e.title = [datname ', Rep. size = ' num2str(repsize) ' Train size'];
    else
      e.title = [datname ', Rep. size = ' num2str(repsize) ' per class'];
    end
  end
  if (learnsizes(end)/learnsizes(1) > 20)
    e.plot = 'semilogx';        % If range too large, use a log-plot for X.
  end

  % Report progress.
        
        s1 = sprintf('cleval: %i classifiers: ',nw);
        prwaitbar(nw,s1);

  % Store the seed, to reset the random generator later for different
  % classifiers.

        seed = rand('state');

  % Loop over all classifiers (with index WI).

  for wi = 1:nw
                
    if (~isuntrained(classf{wi}))
      error('Classifiers should be untrained.')
    end
    name = getname(classf{wi});
    e.names = char(e.names,name);
    prwaitbar(nw,wi,[s1 name]);

    % E1 will contain the error estimates.

    e1 = zeros(nreps,length(learnsizes));
    e0 = zeros(nreps,length(learnsizes));

    % Take care that classifiers use same training set.

    rand('state',seed); seed2 = seed;

                % For NREPS repetitions...
                
                s2 = sprintf('cleval: %i repetitions: ',nreps);
                prwaitbar(nreps,s2);

                for i = 1:nreps
        
                        prwaitbar(nreps,i,[s2 int2str(i)]);
      % Store the randomly permuted indices of samples of class CI to use in
      % this training set in JR(CI,:).

                        if classs

                                JR = zeros(c,max(learnsizes));
                        
                                for ci = 1:c

                                        JC = findnlab(a,ci);

                                        % Necessary for reproducable training sets: set the seed and store
                                        % it after generation, so that next time we will use the previous one.
                                        rand('state',seed2);

                                        JD = JC(randperm(mc(ci)));
                                        JR(ci,:) = JD(1:max(learnsizes))';
                                        seed2 = rand('state'); 
                                end
                                
                        elseif islabtype(a,'crisp')
                                
                                rand('state',seed2); % get seed for reproducable training sets
                                % generate indices for the entire dataset taking care that in
                                % the first 2c objects we have 2 objects for every class
                                [a1,a2,I1,I2] = gendat(a,2*ones(1,c));
                                JD = randperm(m-2*c);
                                JR = [I1;I2(JD)];
                                seed2 = rand('state'); % save seed for reproducable training sets
                                
                        else  % soft labels
                                
                                rand('state',seed2); % get seed for reproducable training sets
                                JR = randperm(m);
                                seed2 = rand('state'); % save seed for reproducable training sets
                                
                        end

                        li = 0;                                                                         % Index of training set.
                        
                        nlearns = length(learnsizes);
                        s3 = sprintf('cleval: %i sizes: ',nlearns);
                        prwaitbar(nreps,s3);
                        
                        for j = 1:nlearns 
                                
                                nj = learnsizes(j);
                                
                                prwaitbar(nlearns,j,[s3 int2str(j) ' (' int2str(nj) ')']);
                                li = li + 1;

        % J will contain the indices for this training set.

        J = [];
        R = [];
                                
                                if classs
                                        for ci = 1:c
                                                J = [J;JR(ci,1:nj)'];
                                                if isempty(repsize)
                                                        R = [R JR(ci,1:nj)];
                                                elseif repsize < 1
                                                        R = [R JR(ci,1:ceil(repsize*nj))];
                                                else
                                                        R = [R JR(ci,1:min(nj,repsize))];
                                                end
                                        end;
                                else
                                        J = JR(1:nj);
                                        if isempty(repsize)
                                                R = J;
                                        elseif repsize < 1
                                                R = JR(1:ceil(repsize*nj));
                                        else
                                                R = JR(1:min(nj,repsize));
                                        end
                                end;
                                        
                                trainset = a(J,R);
                                trainset = setprior(trainset,getprior(trainset,0));
                                w = trainset*classf{wi};                                        % Use right classifier.
                                e0(i,li) = trainset*w*testfun;
                                if (isempty(t))
                                Jt = ones(m,1);
                                        Jt(J) = zeros(size(J));
                                        Jt = find(Jt);                                                          % Don't use training set for testing.
                                        testset = a(Jt,R);
                                        testset = setprior(testset,getprior(testset,0));
                                        e1(i,li) = testset*w*testfun;
                                else
                                        testset = t(:,R);
                                        testset = setprior(testset,getprior(testset,0));
                                        e1(i,li) = testset*w*testfun;
                                end

                        end
                        prwaitbar(0);

                end
                prwaitbar(0);

    % Calculate average error and standard deviation for this classifier
    % (or set the latter to zero if there's been just 1 repetition).

                e.error(wi,:) = mean(e1,1);
                e.apperror(wi,:) = mean(e0,1);
                if (nreps == 1)
                        e.std(wi,:) = zeros(1,size(e.std,2));
                        e.appstd(wi,:) = zeros(1,size(e.appstd,2));
                else
                        e.std(wi,:) = std(e1)/sqrt(nreps);
                        e.appstd(wi,:) = std(e0)/sqrt(nreps);
                end
        end
        prwaitbar(0);

        % The first element is the empty string [], remove it.
        e.names(1,:) = [];

return